Publications

publications by categories in reversed chronological order. generated by jekyll-scholar.

2025

  1. Bioinformatics
    Spatial mutual nearest neighbors for spatial transcriptomics data
    Haowen Zhou, Pratibha Panwar, Boyi Guo, Caleb Hallinan, Shila Ghazanfar, and Stephanie C Hicks
    Bioinformatics, Jul 2025

2023

  1. AlphaTracker: a multi-animal tracking and behavioral analysis tool
    Zexin Chen, Ruihan Zhang, Hao-Shu Fang, Yu E Zhang, Aneesh Bal, Haowen Zhou, Rachel R Rock, Nancy Padilla-Coreano, and 3 more authors
    Frontiers in Behavioral Neuroscience, Jul 2023
  2. Nat. Neurosci.
    Integrative in situ mapping of single-cell transcriptional states and tissue histopathology in a mouse model of Alzheimer’s disease
    Hu Zeng, Jiahao Huang, Haowen Zhou, William J Meilandt, Borislav Dejanovic, Yiming Zhou, Christopher J Bohlen, Seung-Hye Lee, and 3 more authors
    Nature Neuroscience, Jul 2023
  3. Nat. Methods
    Spatiotemporally resolved transcriptomics reveals the subcellular RNA kinetic landscape
    Jingyi Ren, Haowen Zhou, Hu Zeng, Connie Kangni Wang, Jiahao Huang, Xiaojie Qiu, Xin Sui, Qiang Li, and 3 more authors
    Nature Methods, Jul 2023
  4. Aging
    Dectin-1 stimulation promotes a distinct inflammatory signature in the setting of HIV-infection and aging
    Archit Kumar, Jiawei Wang, Allen Esterly, Chris Radcliffe, Haowen Zhou, Brent Vander Wyk, Heather G Allore, Sui Tsang, and 3 more authors
    Aging (Albany NY), Jul 2023
  5. Science
    Spatially resolved single-cell translatomics at molecular resolution
    Hu Zeng, Jiahao Huang, Jingyi Ren, Connie Kangni Wang, Zefang Tang, Haowen Zhou, Yiming Zhou, Hailing Shi, and 3 more authors
    Science, Jul 2023
  6. Cell
    Multimodal charting of molecular and functional cell states via in situ electro-sequencing
    Qiang Li, Zuwan Lin, Ren Liu, Xin Tang, Jiahao Huang, Yichun He, Xin Sui, Weiwen Tian, and 3 more authors
    Cell, Jul 2023

2021

  1. Nat. Commun.
    ClusterMap for multi-scale clustering analysis of spatial gene expression
    Yichun He, Xin Tang, Jiahao Huang, Jingyi Ren, Haowen Zhou, Kevin Chen, Albert Liu, Hailing Shi, and 3 more authors
    Nature communications, Jul 2021
  2. bioRxiv
    In situ electro-sequencing in three-dimensional tissues
    Qiang Li, Zuwan Lin, Ren Liu, Xin Tang, Jiahao Huang, Yichun He, Haowen Zhou, Hao Sheng, and 3 more authors
    BioRxiv, Jul 2021